Ömer Faruk BAYRAK

A.Uluslararası hakemli dergilerde yayımlanan makaleler :

• A1. Atasoy, M., Pirim, I., Bayrak, Ö., Ozdemir, S., Ikbal, M., Erdem, T., Aktas, A, "Association of HLA class I and class II alleles with psoriasis vulgaris in Turkish population Influence of type I and II psoriasis", Saudi Medical Journal 373-376 (ISI) , 373-376 pp., 2006 , DOI: ISSN: 0379-5284
• A2. Agar, G., Adiguzel, A., Baris, O., Sengul, M., Gulluce, M., Sahin, F., Bayrak, O.F., "FAME and RAPD analysis of selected Vicia taxa from eastern Anatolia, Turkey", Annales Botanici Fennici (ISI) , 241-249 pp., 206 , DOI: ISSN: 00033847
• A3. Kahraman, M., Yazici, M.M., Sahin, F., Bayrak, O.F., Culha, M., "Reproducible surface-enhanced Raman scattering spectra of bacteria on aggregated silver nanoparticles", Applied Spectroscopy (ISI) , 479-485 pp., 2007 , DOI: 10.1366/000370207780807731
• A4. Gercekcioglu R, Yilmaz N, Bayrak O.F, Sahin F,, "Variation in Fatty Acid Composition of Tulameen Red Raspberry Seed Oil By The Application of Nitrogen Fertilizers and Organic Manure", International Journal of Natural and Engineering Sciences , 59-64. pp., 2007
• A5. Akgun, H., Berk, B., Demir Erol, D., Mercanoglu, G., Bayrak, O.F., Caglayan, B., Dedeagaç, A., Aksan Kurnaz, I., "Nitric oxide releasing derivatives of [(2-chloroethyl)ureido] benzoic acid esters as potential antineoplastic agents", Turkish Journal of Chemistry (ISI) , 107-121 pp., 2009 , DOI: 10.3906/kim-0807-25

• A6. Karakus, S., Güniz Kucukguzel, S., Kucukguzel, I., De Clercq, E., Pannecouque, C., Andrei, G., Snoeck, R., Sahin, F., Bayrak, O.F., "Synthesis, antiviral and anticancer activity of some novel thioureas derivedfrom N-(4-nitro-2-phenoxyphenyl)-methanesulfonamide", European Journal of Medicinal Chemistry (ISI) , 3591-3595 pp., 2009 , DOI: 10.1016/j.ejmech.2009.02.030
• A7. Bayrak, O.F., Aydemir, E., Sahin, F., "Retinoic acid induced chordomas as a model of differential therapy", Saudi Medical Journal (ISI) , 1236-1237. pp., 2009 , DOI: 03795284
• A8. Yalvac, M.E., Ramazanoglu, M., Rizvanov, A.A., Sahin, F., Bayrak, O.F., Salli, U., Palotás, A., Kose, G.T., "Isolation and characterization of stem cells derived from human third molar tooth germs of young adults: implications in neo-vascularization, osteo-, adipo- and neurogenesis",Pharmacogenomics Journal, (ISI) , 105-113 pp., 2009 , DOI: 10.1038/tpj.2009.40.
• A9. Aydin, O., Altaş, M., Kahraman, M., Bayrak, O.F., Çulha, M., "Differentiation of healthy brain tissue and tumors using Surface-enhanced Raman scattering", Applied Spectroscopy (ISI) , 1095-1100 pp., 2009 , DOI: 10.1366/000370209789553219
• A10. Colak, K. M., Keles, A., Bayrak, O. F., Koseoglu, M., Sahin, F., "Study of cytotoxicity of six root canal sealing dental materials", Materials Research Innovations , 415-420 pp., 2009 , DOI: 10.1179/143289109X12494867167161
• A11. Karapinar-Kazandaǧ, M., Tanalp, J., Bayrak, Ö.F., Sunay, H., Bayirli, G., "Microleakage of various root filling systems using the glucose filtration analysis", Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology (ISI) , 96-102 pp., 2010 , DOI: 10.1016/j.tripleo.2010.01.009
• A12. Altas, M., Bayrak O.F., Cerci, A., Isık , N., Celik, M., Culha, M., Sahin, F., Elmacı, I.,, "Angiotensin-Converting Enzyme I/D Gene Polymorphism in Patients with Familial Multiple Cerebral Cavernous Malformations", Journal of Clinical Neuroscience, (ISI) , 1034-1037. pp., 2010 , DOI: 10.1016/j.jocn.2009.12.002
• A13. Yalvac, M.E., Ramazanoglu, M, Tekguc, M, Bayrak, O.F, Shafigullina, A.K., Salafutdinov I.I., Blatt N.L., Kiyasov, A.P., Sahin, F, Palotás, A, Rizvanov, A.A., "Human Tooth Germ Stem Cells Preserve Neuro-Protective Effects after Long-Term Cryo-Preservation", Current neurovascular research (ISI) , 49-58 pp., 2010 , DOI: 10.2174/156720210790820181
• A14. Esra Tatar E, Küçükgüzel İ, Küçükgüzel SG, Demircan FY, De Clercq E, Andrei G, Snoeck R, Pannecouque C, Sahin F, Bayrak O.F,, "Synthesis, Anti-Tuberculosis and Antiviral Activity of Novel 2-isonicotinoylhydrazono-5-arylidene-4-thiazolidinones", International Journal of Drug Design and Discovery , 19-32 pp., 2010
• A15. Turkekul I, Yilmaz N, Sahin F, Bayrak O.F,, "Fatty Acid Composition of Six Mushroom Samples of Black Sea Region of Turkey", Asian Journal of Chemistry (ISI) , 1479-1486 pp., 2010 , DOI: ISSN: 0970-7077
• A16. Altas M, Bayrak O.F, Ayan E, Bolukbasi F, Silav G, Coskun K.K, Culha M, Sahin F, Sevli S, Elmaci I,, "The Effect of Polymorphisms in The Promoter Region of The MMp-1 Gene on The Occurence and Invasivness of Hypophyseal Adenoma", Acta Neurochirurgica, (ISI) , 1611-1617 pp., 2010 , DOI: 10.1007/s00701-010-0671-0
• A17. Bayrak O.F, Aydemir E, Gulluoglu S, Sahin F, Sevli S, Yalvac M.E, Acar H, Ozen M,, "The Effects of Chemotherapeutic Agents on Differentiated Chordoma Cells", Journal of Neurosurgery Spine, (ISI) , 620-624 pp., 2011 , DOI: 10.3171/2011.7.SPINE10798
• A18. Karapınar-Kazandag M, Bayrak O.F, Yalvac M.E, Ersev H. Tanalp J, Sahin F, Bayırlı G,, "Cytotoxicity of 5 endodontic Sealers on L929 Cell Line and Human Dental Pulp Cells.", International Endodondic Journal (ISI) , 626-634 pp., 2011 , DOI: 10.1111/j.1365-2591.2011.01863.x
• A19. Aydemir E, Bayrak O.F, Sahin F, Atalay B, Kose G.T, Ozen M, Sevli S, Dalan A.B, Yalvac M.E, Dogruluk T, Ture U,, "Characterization of Cancer Stem-Like Cells in Chordoma.", Journal of Neurosurgery (ISI) , 810-820 pp., 2012 , DOI: 10.3171/2011.12.JNS11430
• A20. Karaca, E, Karakoc-Aydiner, E, Bayrak, O.F, Keles, S, Sevli, S, Barlan, I.B, Yuksel, A, Chatila, T.A, Ozen, M., "Identification of a novel mutation in ZAP70 and prenatal diagnosis in a Turkish family with severe combined immunodeficiency disorder", Gene (ISI) , 189-193 pp., 2013 , DOI: 10.1016/j.gene.2012.10.062
• A21. Yilmaz, N, Türkekul, I, Bulut, S, Sahin, F, Bayrak, O.F., "Fatty acid composition in ten mushroom species collected from middle black sea region of Turkey", Asian Journal of Chemistry (ISI) , 1216-1220 pp., 2013 , DOI: ISSN: 09707077
• A22. Altaş M, Bayrak OF, Şerefhan A, Silav G, Coşkun KK, Çerçi A, Işık N, Elmacı E., "Investigation of ACE genome Insertion/Deletion correlation with Immunohistochemical Profile in pituitary adenomas", Turkish Journal of Neurosurgery (ISI) , Baskıda pp., 2013 , DOI: 10.5137/1019-5149.JTN.7423-12.0
• A23. Bayrak, Omer Faruk; Gulluoglu, Sukru; Aydemir, Esra; Ture, Ugur; Acar, Hasan; Atalay, Basar; Demir, Zeynel; Sevli, Serhat; Creighton, Chad J.; Ittmann, Michael; Sahin, Fikrettin; Ozen, Mustafa MicroRNA expression profiling reveals the potential function of microRNA-31 in chordomas

B. Uluslararası bilimsel toplantılarda sunulan ve bildiri kitabında (Proceedings) basılan bildiriler :

• B1. Kahraman, M., Yazici, M.M., Sahin, F., Bayrak, O.F., Topcu, E., Culha, M., 7th Workshop on Biosensors and BioAnalytical Mu-Techniques for Environmental and Clinical Analysis konferansı dahilinde "International Journal of Environmental Analytical Chemistry," bildiri kitapçığındaki "Towards single-microorganism detection using surface-enhanced Raman spectroscopy", 87 (10-11), pp. 763-770. pp., Kusadası Türkiye, Eylül 2006
• B2. Yalvac, M.E., Ramazanoglu, M., Bayrak, O.F., Sahin, F., Kose, G.T., FEBS konferansı dahilinde "FEBS JOURNAL Volume 271" bildiri kitapçığındaki "Multipotent stem cells derived from human dental follicle show osteogenic and neurogenic differentiation", 91 pp., Atina Yunanistan, Temmuz 2008
• B3. Ozdemir, N., Saygili, H., Sahin, F., Karsavuran, Y., Bayrak, O.F., Oral, B., 2nd International Symposium on Tomato Diseases konferansı dahilinde "II INTERNATIONAL SYMPOSIUM ON TOMATO DISEASES Book Series: Acta Horticulturae" bildiri kitapçığındaki "Host range and genetic characterization of a phytoplasma causing tomato stolbur disease in Turkey", 808 255-261 pp., Kuşadası Türkiye, ocak 2009
• B4. Culha, M., Karatas, O.F., Aydin, O., Kahraman, M., Keseroǧlu, K., Sayin, I., Bayrak, O.F., Conference on Plasmonics in Biology and Medicine VI konferansı dahilinde "Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 7192, art. no. 719205." bildiri kitapçığındaki "Towards PCR-free mutation detection based on surface-enhanced Raman scattering", DOI: 10.1117/12.808267 pp., CA USA, 2009
• B5. Uzumcu, A., Tekguc, M., Sevli, S., Bayrak, O.F., Ozen, M.,, International Union of Biochemistry and Molecular Biology konferansı dahilinde "IUBMB LIFE" bildiri kitapçığındaki "THE ROLE OF MICRORNA (miRNA)s AS A NOVEL TOOL IN CANCER DIAGNOSIS AND THERAPY", 298 pp., Şangay Çin, Mart 2009
• B6. Duzenli, S., Bayrak, O.F., Yegin, I., International Union of Biochemistry and Molecular Biology konferansı dahilinde "IUBMB LIFE" bildiri kitapçığındaki "LOSS OF HETEROZYGOSITY (LOH) OF THE CDH1 GENE IN SPORADIC GASTRIC ADENOCARCINOMAS", 6-375 pp., Şangay ÇİN, Mart 2009
• B7. Aydemir, E., Bayrak, O. F., Ozen, M., Sahin, F.,, 35th Congress of the Federation-of-European-Biochemical-Societies konferansı dahilinde "FEBS JOURNAL" bildiri kitapçığındaki "The effects of chemotherapeutic agents on differentiated chordoma cells", 161 pp., Göteborg İsveç, Temmuz 2010
• B8. Yalvac, M.E., Bayrak, O.F., Kose, G.T., Sahin, F., 18th Annual BSHI Conference, konferansı dahilinde "INTERNATIONAL JOURNAL OF IMMUNOGENETICS Volume: 34 Issue: 4" bildiri kitapçığındaki "Neuron-like cells derived from human cervical cancer HeLa cells", 293 pp., Birmingham, UK, Eylül 2007
• B9. Bayrak, O.F., Sahin, F., Pirim, I., Yalvac, M.E., Izbirak, C.D.,, 31st Congress of the Federation-of-European-Biochemical-Societies konferansı dahilinde "FEBS JOURNAL Volume: 273 Supplement: 1" bildiri kitapçığındaki "Relationship between a single nucleotide polymorphism in the matrix metalloproteinase-1 promoter and ovarian cancer", 88-89 pp., İstanbul, Türkiye, Haziran 2006

C. Yazılan uluslararası kitaplar veya kitaplarda bölümler :
D. Ulusal hakemli dergilerde yayımlanan makaleler :

• D1. Gercekcioglu R, Yilmaz N, Bayrak O.F, Sahin F,, "Variation in Fatty Acid Composition of Tulameen Red Raspberry Seed Oil By The Application of Nitrogen Fertilizers and Organic Manure", International Journal of Natural and Engineering Sciences , 59-64 pp., 2007
• D2. Çıkla, P., Küçükgüzel, Ş.G., Küçükgüzel, İ., Rollas, S., De Clercq, E., Pannecouque, C., Andrei, G., Snoeck,R., Şahin, F., Bayrak, O.F.,, "Synthesis and evaluation of antiviral, antitubercular and anticancer activities of some novel thioureas derived from 4-aminobenzohydrazide hydrazones", Marmara Pharmaceutical Journal , 13-20 pp., 2010

F. Diğer yayınlar :

• F1. Journal of Neurosurgery
• Volume 118, Issue 4, April 2013, Page 914 Bayrak, Ö.F., Gulluoglu, S., Aydemir, E., Türe, U, DOI: 10.3171/2012.3.JNS12478
• F2. Journal of Neurosurgery: Bayrak, Ö.F., Gulluoglu, S., Aydemir, E.,SpineFebruary 15, 2013; DOI: 10.3171/2012.2.SPINE111060.